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10X Genomics
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SAS institute
superanova software Superanova Software, supplied by SAS institute, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more https://www.bioz.com/product/superanova+computer+software+version/10__1128_slash_aem__69__9__5222___5227__2003-138-7-10?v=SAS+institute Average 90 stars, based on 1 article reviews
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SAS institute
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10X Genomics
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10X Genomics
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Image Search Results
Journal: GigaScience
Article Title: Sequencing smart: De novo sequencing and assembly approaches for a non-model mammal
doi: 10.1093/gigascience/giaa045
Figure Lengend Snippet: Information regarding the possible resolution for various de novo genome sequencing technologies
Article Snippet: The 10x Genomics Chromium library was assembled using the
Techniques: Sequencing
Journal: GigaScience
Article Title: Sequencing smart: De novo sequencing and assembly approaches for a non-model mammal
doi: 10.1093/gigascience/giaa045
Figure Lengend Snippet: Ten different assembly strategies using a variety of different data types: PCR-free Illumina short-read (“PCR-free”), long mate pair (“LMP”), 10x Genomics Chromium library (“10x”), and Bionano Genomics optical maps (“Bionano”). The blue-boxed assemblies all originate from the same PCR-free w2rap assembly (A1), and the black-boxed assemblies all originate from the same 10x Genomics Supernova assembly (A3). Information in paretheses refers to assembly software pipeline, and assembly numbers are annotated below each assembly.
Article Snippet: The 10x Genomics Chromium library was assembled using the
Techniques: Software
Journal: GigaScience
Article Title: Sequencing smart: De novo sequencing and assembly approaches for a non-model mammal
doi: 10.1093/gigascience/giaa045
Figure Lengend Snippet: Genome assembly statistics (for sequences >1 kb) for all assemblies
Article Snippet: The 10x Genomics Chromium library was assembled using the
Techniques:
Journal: GigaScience
Article Title: Sequencing smart: De novo sequencing and assembly approaches for a non-model mammal
doi: 10.1093/gigascience/giaa045
Figure Lengend Snippet: Comparison of the number of breaks introduced by REAPR for each of the technologies used to scaffold the w2rap-only assembly (A1)
Article Snippet: The 10x Genomics Chromium library was assembled using the
Techniques: Comparison
Journal: GigaScience
Article Title: Sequencing smart: De novo sequencing and assembly approaches for a non-model mammal
doi: 10.1093/gigascience/giaa045
Figure Lengend Snippet: Comparison of the number of breaks introduced by REAPR for each of the technologies used to scaffold the 10x assembly (A3)
Article Snippet: The 10x Genomics Chromium library was assembled using the
Techniques: Comparison
Journal: GigaScience
Article Title: Sequencing smart: De novo sequencing and assembly approaches for a non-model mammal
doi: 10.1093/gigascience/giaa045
Figure Lengend Snippet: Repeat content of assemblies
Article Snippet: The 10x Genomics Chromium library was assembled using the
Techniques:
Journal: GigaScience
Article Title: Sequencing smart: De novo sequencing and assembly approaches for a non-model mammal
doi: 10.1093/gigascience/giaa045
Figure Lengend Snippet: Cumulative z -scores of assemblies (solid black circles). Error bars represent the minimum and maximum cumulative z -score after removing each metric in turn and recalculating the z -score for each assembly. Wide error bars show assemblies that are strongly affected by a given metric. For example, the 10x + lmp + bionano assembly (A8) has a long lower-boundary error bar because it has an exceptionally high scaffold N50 z -score (double that of the next nearest ranking assembly) and hence omitting this metric results in the assembly scoring much lower.
Article Snippet: The 10x Genomics Chromium library was assembled using the
Techniques:
Journal: GigaScience
Article Title: Sequencing smart: De novo sequencing and assembly approaches for a non-model mammal
doi: 10.1093/gigascience/giaa045
Figure Lengend Snippet: REAPR statistics showing the percentage of error-free bases in the assembly, N50s before and after breaking at breakpoints, the percentage decrease in scaffold N50 after breaking, and the fragment coverage distribution (FCD) errors including errors across gaps
Article Snippet: The 10x Genomics Chromium library was assembled using the
Techniques: